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Home » Breakfast

Low FODMAP Blueberry Muffins

Published: May 22, 2018 · Updated: Apr 5, 2022 by Em Schwartz, MS, RDN

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Low FODMAP Blueberry Muffins
A basket of blueberry muffins. In the top right corner a black text overlay reads "Low FODMAP Blueberry Muffins."
A batch of blueberry muffins on a cooling rack. A black text overlay reads "Low FODMAP Blueberry Muffins."
A bowl of blueberry muffins. Above the bowl, black text reads "Low FODMAP Blueberry Muffins."
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9 blueberry muffins in a bowl lined with a dark gray linen napkin

Enjoy these warm, fluffy low FODMAP blueberry muffins for breakfast or dessert. They're made with just 9 ingredients including FODMAP diet-friendly amounts of blueberries, low FODMAP flour, and almond milk.

Most blueberry muffin recipes are made with wheat flour. While the low FODMAP diet does not need to be wheat-free (for most people), wheat-based products tend to be higher in FODMAPs, specifically the FODMAP group: fructans.

Blueberries can also be high in FODMAPs when eaten in larger amounts.

This blueberry muffin recipe features gluten-free flour (a low-FODMAP alternative to wheat flour) and a smaller amount of blueberries to reduce the FODMAP content.

Jump to:
  • Shopping List
  • Low FODMAP notes
  • Instructions
  • Serve this with
  • Recipe
Ingredients needed for low FODMAP blueberry muffins measured and divided into small white bowls

Shopping List

To make these low FODMAP muffins, add these ingredients to your shopping list:

  • Bob’s Red Mill Gluten-Free 1:1 Baking Flour (the blue bag) - 1 ¾ cup
  • Baking powder - 2 teaspoons
  • Salt - ½ teaspoon
  • Granulated sugar - ¾ cup
  • Avocado oil (or canola oil) - ½ cup
  • Unsweetened almond milk - ½ cup
  • Eggs - 2 large
  • Pure vanilla extract - 1 teaspoon
  • Fresh blueberries - 1 ½ cup

Low FODMAP notes

In this section, I share information for ingredients that are either frequently asked about or have suggested serving sizes to remain low FODMAP. We each have unique tolerance levels and nutritional needs. Please listen to your body (and, if possible, work with a FODMAP-trained dietitian) to determine what is best for you. For more low FODMAP serving size info, please refer to the Monash FODMAP app and FODMAP Friendly website or app.

Almond milk is low FODMAP in servings of 1 cup (250 mL) or 240 grams. My go-to is Almond Breeze unsweetened almond milk.

Avocado oil is naturally low in FODMAPs. Like other plain cooking oils, avocado oil contains only dietary fat and no carbohydrates (FODMAPs are types of carbohydrates). I like avocado oil because it is a source of monounsaturated fats (heart-healthy fats). It is also neutral-flavored with a high smoke point, making it a versatile option for cooking and baking.

Blueberries are low FODMAP in servings of a heaping ¼ cup or 40 grams. Larger servings contain higher levels of fructans. have been retested! The suggested low FODMAP serving is 1 cup or 125 grams.

Bob’s Red Mill Gluten-Free 1:1 Baking Flour (in the blue bag) is my go-to low-FODMAP flour. Wheat flour is high in FODMAPs, whereas gluten-free flours made with rice, potato, and tapioca starch are low FODMAP in amounts up to ⅔ cups or 100 grams.

Although this Bob's Red Mill flour hasn’t specifically been tested, it appears to be low FODMAP by ingredients. It is also readily available across the US. You can usually find this flour in the “health,” “natural,” or gluten-free foods section of the grocery store and online.

Unless you tolerate GOS, avoid the Bob's Red Mill Gluten-Free All-Purpose Baking Flour in the red bag while low FODMAPing. This flour is made from higher FODMAP garbanzo beans.

A batch of blueberry muffins on a cooling rack.

Instructions

To make these low FODMAP blueberry muffins, simply:

Step 1: Preheat oven to 350°F. Line a regular muffin tin with muffin liners.

Whisking gluten-free flour, baking powder, and salt.

Step 2: In a large mixing bowl, whisk gluten-free flour, baking powder, and salt until mixed. Using a spatula, create a well in the center of the flour mixture.

Whisking eggs, sugar, oil, milk, and vanilla.

Step 3: In a medium mixing bowl, whisk together sugar, avocado oil, low FODMAP milk, eggs, and vanilla extract until smooth.

Adding wet ingredients to flour mixture.

Step 4: Pour the wet ingredients into the well created in the center of the dry ingredients.

Whisking muffin batter.

Whisk until just mixed. When the batter is almost mixed (still a little lumpy), I like to finish by running a spatula around the sides and underneath the batter to help catch any hidden pockets of dry ingredients.

Folding blueberries into muffin batter.

Step 5: Gently fold the blueberries into the muffin batter.

Filling muffin tin with blueberry muffin batter.

Step 6: Divide the batter evenly into the lined muffin tin cups. I like to use an ice cream scoop (similar) to help divide the batter evenly. The scoop I use equals a ¼ cup.

Transferring muffin tin filled with muffin batter to the oven.

Step 7: Bake for 28-32 minutes, or until the tops are lightly golden and a toothpick inserted into the center comes out clean.

Freshly baked blueberry muffins in a muffin tin.

Step 8: Remove muffins from the oven. Cool in the muffin tin for 10 minutes.

Serve warm. Or, remove muffins from tin and transfer to a wire cooling rack. Cool muffins completely before storing.

A low FODMAP blueberry muffin broken in half.

Storage: After cooling completely to room temperature, transfer muffins to an airtight container and store at room temperature for 3-4 days.

Serve this with

Every person has unique nutritional needs. If you'd like to enjoy these muffins with additional food, consider adding a serving of:

  • Low FODMAP protein like a hard-boiled egg or schmear of peanut butter
  • Low FODMAP milk like a glass of lactose-free cow's milk or unsweetened almond milk

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Recipe

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gluten-free blueberry muffins in a bowl lined with a cloth napkin

Low FODMAP Blueberry Muffins


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5 from 7 reviews

  • Author: Em Schwartz, MS, RDN
  • Total Time: 40 minutes
  • Yield: 12 1x
  • Diet: Low Lactose
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Description

Enjoy these warm, fluffy low FODMAP blueberry muffins for breakfast or dessert. They're made with just 9 ingredients including low FODMAP amounts of blueberries, wheat-free flour, and almond milk.


Ingredients

Scale

1 ¾ cup Bob’s Red Mill Gluten-Free 1:1 Baking Flour (the blue bag)
2 teaspoons baking powder
½ teaspoon salt
¾ cup granulated sugar
½ cup avocado oil (or canola oil)
½ cup unsweetened almond milk
2 large eggs
1 teaspoon pure vanilla extract
1 ½ cup fresh blueberries


Instructions

  1. Preheat oven to 350°F. Line a regular muffin tin with muffin liners.
  2. In a large mixing bowl, whisk gluten-free flour, baking powder, and salt until mixed. Using a spatula, create a well in the center of the flour mixture.
  3. In a medium mixing bowl, whisk together sugar, avocado oil, low FODMAP milk, eggs, and vanilla extract until smooth.
  4. Pour the wet ingredients into the well created in the center of the dry ingredients. Whisk until just mixed. 
  5. Gently fold the blueberries into the muffin batter.
  6. Divide the batter evenly into the lined muffin tin cups. I like to use a ¼-cup ice cream scoop (with a trigger) to help.
  7. Bake for 28-32 minutes, or until the tops are lightly golden and a toothpick inserted into the center comes out clean.
  8. Remove muffins from the oven. Cool in the muffin tin for 10 minutes.
  9. Serve warm. Or, remove muffins from tin and transfer to a wire cooling rack. Cool muffins completely before storing.

Storage: After cooling completely to room temperature, transfer muffins to an airtight container and store at room temperature for 3-4 days. Freeze for up to 3 months. 

Notes

Low FODMAP Serving: One serving (1 muffin) is low FODMAP by ingredients. Individual tolerance may vary. For more information about specific ingredients, please refer to the "Low FODMAP Notes" section (above the recipe in the blog post) or the Monash FODMAP app. 

Frozen blueberries: Frozen blueberries can be substituted for fresh. When I tested this, the muffins had a slight blue-purple hue but were overall very similar in taste and texture to the muffins made with fresh.

Flax eggs: I have also tried this recipe substituting flax eggs (2 tablespoons flaxseed meal thickened in 5 tablespoons water) in place of the eggs to make these muffins plant-based. The result is a denser blueberry muffin with a pronounced flaxseed flavor. 

  • Prep Time: 15 minutes
  • Cook Time: 30 minutes
  • Category: Dessert, Breakfast
  • Method: Bake
  • Cuisine: American

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A basket of blueberry muffins. Above a black text overlay reads "Low FODMAP Blueberry Muffins."
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Comments

  1. Julie says

    March 30, 2025 at 11:15 am

    These turned out great! We used frozen blueberries (no need to thaw, just fold them in quickly so they don't turn the batter purple!). They didn't taste "low fodmap"- they tasted like simply delicious muffins!

    Reply
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Hi! I'm Emily, the dietitian behind Fun Without Fodmaps

Hey! I'm Emily - a FODMAP-trained Registered Dietitian living with IBS. I love creating easy low FODMAP recipes for you (and me)!

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